rs31879481 SNP Detail

Summary

• ID
  rs31879481
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:97446768 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAGGAAAGA GGGCAAAGGA
  GGGAGGGAGG AAGGAAGGAA GAAAGTTCTT GAGTGTGCAA GGCAGCCTTT TGTTACTATA
  AAAATGCCTG AGATAATAAG CCTATAAGTT TATTTTGCAT TTATCAGCAA GTAATTGACT
  GGCTTTGTTT CTCTGGAGCC TGTGGTGAAG AAGTGCATTT TGGAGGGAAG GCATGAAGGA
  M
  CATCCTGGTC TCACAGTGAG GACTAGGGAG ATTGCCACTT TGTCCTTCAA AGGAGCATCC
  ACAAAGCCTG AACTCCTCAC AGGAGACCCT TGAAGTCTCC ACAGCATCCC AGCATCACTG
  CAAACAACCC TTTAACATAT GGCCCCTTCA GGAACATTCC ATATCACTGA TTGCATGTAG
  CATTTGATTT TGTTTCTAAA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46614616	NES10418768	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	C	A	A	A	A	A	C	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31879481					SNP	A	A	A	A	A	A	C	A	A	A	A	A	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46614616	NES10418768	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:97446768 () rs orientation: forward

Symbol	Name	Function Class
Gm72500	predicted gene, 72500	within coordinates
Rr615043	regulatory region 615043	1271 bp proximal
Rr615044	regulatory region 615044	1916 bp proximal