rs31879791 SNP Detail

Summary

• ID
  rs31879791
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:149419511 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGCTG TGAAGGTGCA GACCACAGAT
  R
  CCAACCACAC GGCTCAGTGC CAGGC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45580064	mCV24954476	ABI	CRAMUS_MOUSE	f	SNP	G	G	G					G		A
ss46702719	NES10938014	PERLEGEN	MM_PANEL2	f	SNP	G		G	A	G	G	A		G	A	G	G		G	G	A		G
ss148031523	ENSMUSSNP3754763	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G							A
ss321425443	CHEV_4_148709163	CHEVERUD	SCREENING_POP	f	SNP													A				G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs31879791					SNP	G	G	G	A	G	G	A	G	G	A	G	G	A	G	G	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46702719	NES10938014	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:149419511 () rs orientation: forward

Symbol	Name	Function Class
Tssr40324	transcription start site region 40324	375 bp downstream
Ube4b	ubiquitination factor E4B	within coordinates
Ube4bos2	ubiquitination factor E4B, opposite strand 2	within coordinates
Ube4bos3	ubiquitination factor E4B, opposite strand 3	within coordinates