rs31879991 SNP Detail

Summary

• ID
  rs31879991
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:63132990 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGTGT GAGTGTTTGG AGTGTGCCTG
  S
  GGGAGTGTGT GTGCGGGAGT GTGGT                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J
ss45581522	mCV22875304	ABI	CRAMUS_MOUSE	f	SNP	C	G	C	C
ss146440592	ENSMUSSNP6695512	ENSEMBL	ENSEMBL_Sanger	f	SNP		G		C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J
rs31879991					SNP	C	G	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:63132990 () rs orientation: forward

Symbol	Name	Function Class
Col27a1	collagen, type XXVII, alpha 1	Intron
Cpgi14368	CpG island 14368	within coordinates
Rr593488	regulatory region 593488	809 bp distal
Rr593489	regulatory region 593489	792 bp distal
Rr593490	regulatory region 593490	270 bp distal
Rr593491	regulatory region 593491	192 bp proximal
Rr593492	regulatory region 593492	542 bp proximal
Rr593493	regulatory region 593493	693 bp proximal
Tssr1192	transcription start site region 1192	716 bp downstream
Tssr37533	transcription start site region 37533	652 bp downstream
Tssr37534	transcription start site region 37534	603 bp downstream
Tssr37535	transcription start site region 37535	649 bp upstream
Tssr37536	transcription start site region 37536	787 bp upstream
Tssr37537	transcription start site region 37537	804 bp upstream