rs31880037 SNP Detail

Summary

• ID
  rs31880037
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr8:66845647 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGAGTCTTC TGTACTCTGG
  TATTAAGACC TTGAATTTAC ATTTCTGGTA TAGTCACAGA TGATACTGAT GCTTTAGACT
  AAAAATCATG TCTTAAGAAC CATAGTTGTA TGTCATAGGT CTCTCATGGT TTAGATGGGA
  AGAAAGTGGA AGACAGGGAA GCAAAAGATG AGTTAGGAAA GCTGTTAGAC ATTTGTGGTA
  M
  ATCATAACTC AGTTTCTTTC TTGTTCACAA TCATAGGCTG ATACAGTTGA GCCATTACCA
  GAAACCCAAT CATCCTGGTT AGGCTGCTGC TTCCATTTCA AAGCCACTTC CTCAACTCAG
  TCAACCCCAA TTCCTTCTGT GAGCCCACAG CTTCCTGAAT CCTGTTTCTG ACTCTTGTTT
  CATCTATGTA GGATGTATTC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47599967	NES11431185	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31880037					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47599967	NES11431185	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:66845647 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm64317	predicted gene, 64317			within coordinates
Marchf1	membrane associated ring-CH-type finger 1			Intron
				Noncoding-Transcript-Variant
Tssr77555	transcription start site region 77555			802 bp downstream