rs31880040 SNP Detail

Summary

• ID
  rs31880040
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:66846356 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCTGGTATA CATATAAAAG
  CCTTGTCTCA AAACTCGAAA GGAAGAAAAT AGTGTGTTAA ATGAAGAAAT ACTGAATCCA
  GGTATCCAGA TAGCTTCAGG GACTTCAAAC ACTCAAACAA TGTAGCTGTT TTCTTGCCTG
  TATGTTGACA TTTCTTTCTA GAGACAGTTT TCATGTTCAT TGAAAAGGAG AAAGTTGGCA
  Y
  AGAGGGAGAC AACTTCAGAT CATTAGCAGT GGTCTGAAAG AGAAAGGATA TGTTCCCAAC
  TTCTTGAAAA TAAATCTGAT GTAAGGAATA TAATCAGCTT GGCCTAGGTC TCATGTATCC
  AAAAGTCAGT CACAATAGGG ATATAGAGTA TAAAGCCCTG GAATGAAAAG CTATATTTAA
  AATGGAGCTA AGAGCAACTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47599970	NES11431125	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31880040					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47599970	NES11431125	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:66846356 () rs orientation: forward

Symbol	Name	Function Class
Gm64317	predicted gene, 64317	within coordinates
Marchf1	membrane associated ring-CH-type finger 1	within coordinates
Tssr77555	transcription start site region 77555	1511 bp downstream