rs31880220 SNP Detail

Summary

• ID
  rs31880220
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:30121889 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTGGG AAGTCTGGGC TGGGGATTTG
  Y
  TCTTCTTGGG TCGAGGGAAC CGGAT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss46078766	mCV22814554	ABI	CRAMUS_MOUSE	f	SNP	C	C	T	T
ss148677533	ENSMUSSNP4458421	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T	T
ss322134120	CHEV_7_31207483	CHEVERUD	SCREENING_POP	f	SNP					C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs31880220					SNP	C	C	T	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:30121889 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18799	CpG island 18799	within coordinates
Cpgi18800	CpG island 18800	630 bp proximal
Nfkbid	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, delta	within coordinates
Rr400239	regulatory region 400239	610 bp downstream
Rr400240	regulatory region 400240	31 bp downstream
Rr644814	regulatory region 644814	722 bp distal
Rr644815	regulatory region 644815	48 bp distal
Rr644816	regulatory region 644816	321 bp proximal
Tssr2184	transcription start site region 2184	880 bp upstream
Tssr65714	transcription start site region 65714	722 bp downstream
Tssr65715	transcription start site region 65715	169 bp downstream
Tssr65716	transcription start site region 65716	33 bp downstream
Tssr65717	transcription start site region 65717	20 bp downstream
Tssr65718	transcription start site region 65718	within coordinates
Tssr65719	transcription start site region 65719	802 bp upstream
Tssr65720	transcription start site region 65720	841 bp upstream
Tssr65721	transcription start site region 65721	898 bp upstream
Tssr65722	transcription start site region 65722	917 bp upstream
Tssr65723	transcription start site region 65723	948 bp upstream
Tssr65724	transcription start site region 65724	964 bp upstream
Tssr65725	transcription start site region 65725	1136 bp upstream
Tssr65726	transcription start site region 65726	1143 bp upstream
Tssr65727	transcription start site region 65727	1161 bp upstream
Tssr65728	transcription start site region 65728	1456 bp upstream
Tssr65729	transcription start site region 65729	1774 bp upstream
Tssr65730	transcription start site region 65730	1822 bp upstream
Tssr65731	transcription start site region 65731	1848 bp upstream
Tssr65732	transcription start site region 65732	1886 bp upstream
Tssr65733	transcription start site region 65733	1914 bp upstream
Tssr65734	transcription start site region 65734	1955 bp upstream
Tssr71745	transcription start site region 71745	828 bp upstream