rs31880275 SNP Detail

Summary

• ID
  rs31880275
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:156055657 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATCAC GTGTGAGAAA TTAAAGGTTG
  M
  ATCTAAAGAG ACTCCCATCT CTGTC                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J
ss45080616	mCV23503752	ABI	CRAMUS_MOUSE	f	SNP	A	C
ss145791081	ENSMUSSNP5611759	ENSEMBL	ENSEMBL_Sanger	f	SNP	A
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J
rs31880275					SNP	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:156055657 () rs orientation: forward

Symbol	Name	Function Class
Gm38113	predicted gene, 38113	794 bp upstream
Rr421145	regulatory region 421145	851 bp distal
Rr421146	regulatory region 421146	1246 bp proximal
Rr421147	regulatory region 421147	1384 bp proximal
Rr421148	regulatory region 421148	1532 bp proximal
Rr421149	regulatory region 421149	1652 bp proximal