rs31880343 SNP Detail

Summary

• ID
  rs31880343
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:28166197 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CACCA TGCCGCCCGC TGAGGGCCCA
  Y
  TTCTTGGGCG GCACCATGAT CATCG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss46078575	mCV22858968	ABI	CRAMUS_MOUSE	f	SNP	C	C	T	T	T
ss148633028	ENSMUSSNP1130047	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T		T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs31880343					SNP	C	C	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:28166197 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18706	CpG island 18706	within coordinates
Lrfn1	leucine rich repeat and fibronectin type III domain containing 1	within coordinates
Rr644282	regulatory region 644282	1411 bp distal
Rr644283	regulatory region 644283	212 bp proximal
Rr644284	regulatory region 644284	329 bp proximal
Tssr65486	transcription start site region 65486	1127 bp upstream