rs31882011 SNP Detail

Summary

• ID
  rs31882011
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:125870002 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATTAC AAGTAGCAGT AGCAGTAGTG
  Y
  GGGCTGCCAA GCAGAAGTCT GCGCA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss46079392	mCV25172308	ABI	CRAMUS_MOUSE	f	SNP	C	C	T
ss145871754	ENSMUSSNP1972616	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	T
ss322450381	CHEV_7_133414344	CHEVERUD	SCREENING_POP	f	SNP				T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs31882011					SNP	C	C	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:125870002 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19689	CpG island 19689	887 bp proximal
Rr368426	regulatory region 368426	918 bp upstream
Rr381444	regulatory region 381444	within coordinates
Rr655453	regulatory region 655453	1299 bp proximal
Sbk1	SH3-binding kinase 1	within coordinates
Tssr69002	transcription start site region 69002	1583 bp upstream
Tssr69003	transcription start site region 69003	1598 bp upstream
Tssr69004	transcription start site region 69004	1614 bp upstream
Tssr69005	transcription start site region 69005	1633 bp upstream
Tssr69006	transcription start site region 69006	1645 bp upstream
Tssr69007	transcription start site region 69007	1676 bp upstream
Tssr69008	transcription start site region 69008	1696 bp upstream
Tssr69009	transcription start site region 69009	1759 bp upstream
Tssr69010	transcription start site region 69010	1954 bp upstream