rs31882446 SNP Detail

Summary

• ID
  rs31882446
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:28948504 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGAAT ATAAGACCTC CAATTTGGGA
  Y
  ATGGCTTCAC CATGTGACTT TCGGG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss46079062	mCV24569333	ABI	CRAMUS_MOUSE	f	SNP	T	C					T		T
ss60986961	NES16139357	PERLEGEN	MM_PANEL2	f	SNP	T	C	T	C	T	T		C	T	C	T		C	T	T	C		C
ss148644068	ENSMUSSNP4756011	ENSEMBL	ENSEMBL_Sanger	f	SNP		C							T
ss322127534	CHEV_7_30034098	CHEVERUD	SCREENING_POP	f	SNP												C					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs31882446					SNP	T	C	T	C	T	T	T	C	T	C	T	C	C	T	T	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60986961	NES16139357	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:28948504 () rs orientation: forward

Symbol	Name	Function Class
2200002D01Rik	RIKEN cDNA 2200002D01 gene	612 bp upstream
Cpgi18753	CpG island 18753	893 bp distal
Gm73451	predicted gene, 73451	894 bp downstream
Tssr65618	transcription start site region 65618	1409 bp downstream
Tssr71635	transcription start site region 71635	1941 bp upstream
Tssr71636	transcription start site region 71636	1334 bp upstream
Tssr71637	transcription start site region 71637	1140 bp upstream
Tssr71638	transcription start site region 71638	1107 bp upstream
Tssr71639	transcription start site region 71639	655 bp upstream
Tssr71640	transcription start site region 71640	611 bp upstream
Tssr71641	transcription start site region 71641	546 bp upstream
Yif1b	Yip1 interacting factor homolog B (S. cerevisiae)	1482 bp downstream