rs31882450 SNP Detail

Summary

• ID
  rs31882450
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:16188902 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCACC CCTTCCCGTG TTATTTTGAG
  R
  CAGTCGCAGT AGCCCGAGTA AGCCT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss46079066	mCV22944395	ABI	CRAMUS_MOUSE	f	SNP	G	G	A
ss148386815	ENSMUSSNP2763013	ENSEMBL	ENSEMBL_Sanger	f	SNP	G		A
ss322110723	CHEV_7_17040326	CHEVERUD	SCREENING_POP	f	SNP				G	A
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31882450					SNP	G	G	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:16188902 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18377	CpG island 18377	1440 bp distal
Cpgi18378	CpG island 18378	32 bp proximal
Npas1	neuronal PAS domain protein 1	741 bp downstream
Tmem160	transmembrane protein 160	within coordinates
Tssr64614	transcription start site region 64614	1946 bp downstream