rs31882669 SNP Detail

Summary

• ID
  rs31882669
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:135872944 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGAGA CCGAATCTTT TTATTTCTTC
  R
  ATTCCTTGAA ACTTGGCAGC AGCTC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45581647	mCV25111142	ABI	CRAMUS_MOUSE	f	SNP	G	A	A
ss147559881	ENSMUSSNP4559894	ENSEMBL	ENSEMBL_Sanger	f	SNP	G		A
ss321354265	CHEV_4_135701548	CHEVERUD	SCREENING_POP	f	SNP				G	A
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31882669					SNP	G	A	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:135872944 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15098	CpG island 15098	479 bp distal
Cpgi15099	CpG island 15099	1900 bp proximal
Gm57159	predicted gene, 57159	590 bp upstream
Gm68296	predicted gene, 68296	1554 bp upstream
Id3	inhibitor of DNA binding 3	241 bp downstream
Rr377254	regulatory region 377254	546 bp upstream
Rr398607	regulatory region 398607	1716 bp downstream
Rr602286	regulatory region 602286	100 bp distal
Rr602287	regulatory region 602287	1064 bp proximal
Rr602288	regulatory region 602288	1565 bp proximal
Tssr39667	transcription start site region 39667	1801 bp downstream
Tssr39668	transcription start site region 39668	829 bp downstream
Tssr39669	transcription start site region 39669	1588 bp upstream