rs31883466 SNP Detail

Summary

• ID
  rs31883466
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:12656028 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCTCA CCAAAGTTTC TGCGCATGTG
  Y
  GCCGACTCAG AAGCCTAGCT AGTAC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss46079797	mCV24394459	ABI	CRAMUS_MOUSE	f	SNP		C				C	T
ss51469128	NES13985218	PERLEGEN	MM_PANEL2	f	SNP	T	C	C	T	T		T	T	C		T	T	C	C		C
ss148341412	ENSMUSSNP4086954	ENSEMBL	ENSEMBL_Sanger	f	SNP		C					T
ss322106841	CHEV_7_13507450	CHEVERUD	SCREENING_POP	f	SNP										C					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs31883466					SNP	T	C	C	T	T	C	T	T	C	C	T	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51469128	NES13985218	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:12656028 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18322	CpG island 18322	within coordinates
Gm57203	predicted gene, 57203	within coordinates
Rps5	ribosomal protein S5	195 bp upstream
Rr368230	regulatory region 368230	within coordinates
Rr642402	regulatory region 642402	11 bp distal
Rr642403	regulatory region 642403	within coordinates
Rr642404	regulatory region 642404	275 bp proximal
Tssr64485	transcription start site region 64485	214 bp upstream
Tssr64486	transcription start site region 64486	853 bp upstream
Tssr70626	transcription start site region 70626	5 bp upstream