rs31883581 SNP Detail

Summary

• ID
  rs31883581
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:131802209 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCTGG GGCTGCGCCG CGGCGCTGAG
  W
  CCTGCTGCGG ACGAACACCC ACGAC                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45581661	mCV24921323	ABI	CRAMUS_MOUSE	f	SNP	A	A	T	T	T
ss147472906	ENSMUSSNP4751951	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	T		T
ss321330379	CHEV_4_131630813	CHEVERUD	SCREENING_POP	f	SNP						A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31883581					SNP	A	A	T	T	T	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:131802209 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14949	CpG island 14949	within coordinates
Epb41	erythrocyte membrane protein band 4.1	within coordinates
Gm10300	predicted gene 10300	within coordinates
Rr1070	regulatory region 1070	371 bp upstream
Rr600863	regulatory region 600863	1692 bp distal
Rr600864	regulatory region 600864	191 bp distal
Rr600865	regulatory region 600865	within coordinates
Rr600866	regulatory region 600866	384 bp proximal
Rr600867	regulatory region 600867	1914 bp proximal
Tssr39361	transcription start site region 39361	706 bp upstream
Tssr43633	transcription start site region 43633	352 bp downstream
Tssr43634	transcription start site region 43634	401 bp downstream
Tssr43635	transcription start site region 43635	519 bp downstream