rs31884467 SNP Detail

Summary

• ID
  rs31884467
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:23771420 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGTCGTGGA TGACCCATTA
  CTTGCCTGGC CATTCCAGGT TCCATTCTCA TTATCCCATC CTCCTCCCCC CTCCCCCATT
  TACTGAATGA AGACAGCCAC AGTCTGTATA CTGTGTCCAA TGGCTCAGGA GCCTTGGGTC
  CTCAGACATA TCACATACCA GGGTCTCCAT TGGAAACCAG CATCAGGTGC AATGTTATTC
  Y
  ACAGAGACTC TCTGGCTCCC TCATCTGAGA CCAGGAACTC CAATGGGTCC CTGGCTTTTG
  ACCACACCTA AGGATTATCT GTATAATAGC CATAGCATCT GAATCTCTAC CTTTGTTCAG
  AGGTTATTGG ACCCACTTGG AACCTGGCCA GAGACACCCC AGAGTATGGG TCTTGTAAGC
  CAAACGATCT GTAGATTTTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46079228	mCV25422378	ABI	CRAMUS_MOUSE	f	SNP	T	T	C					C	C
ss51472339	NES13983649	PERLEGEN	MM_PANEL2	f	SNP	T		C	C	C	T	T		C	C	C	T	C	T	T	C
ss148586088	ENSMUSSNP7164568	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C						C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31884467					SNP	T	T	C	C	C	T	T	C	C	C	C	T	C	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51472339	NES13983649	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:23771420 () rs orientation: forward

Symbol	Name	Function Class
Gm36694	predicted gene, 36694	within coordinates
Gm44943	predicted gene 44943	1920 bp upstream