rs31884566 SNP Detail

Summary

• ID
  rs31884566
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:135161803 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTTTA GGCTAGTAGT AGCGCCGAGG
  S
  TGGCTGGCAT TTTAATTTTA ATTGC                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45581668	mCV25168399	ABI	CRAMUS_MOUSE	f	SNP	G	G	C	C	C
ss147546882	ENSMUSSNP5509094	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	C
ss321352223	CHEV_4_134990407	CHEVERUD	SCREENING_POP	f	SNP						G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31884566					SNP	G	G	C	C	C	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:135161803 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15072	CpG island 15072	within coordinates
Gm69862	predicted gene, 69862	within coordinates
Rcan3	regulator of calcineurin 3	649 bp upstream
Tssr39615	transcription start site region 39615	472 bp downstream
Tssr43991	transcription start site region 43991	623 bp upstream