rs31885191 SNP Detail

Summary

• ID
  rs31885191
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:30428926 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TAGTC GGCCTCGCCG GCACCGGGGC
  Y
  TGGCGCCCAC CTGCTTTGCC GTGGC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss46079823	mCV25319248	ABI	CRAMUS_MOUSE	f	SNP	C	C	T
ss322136279	CHEV_7_31514520	CHEVERUD	SCREENING_POP	f	SNP				C	T
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31885191					SNP	C	C	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:30428926 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18821	CpG island 18821	within coordinates
Gapdhs	glyceraldehyde-3-phosphate dehydrogenase, spermatogenic	278 bp downstream
Rr400253	regulatory region 400253	58 bp upstream
Rr644901	regulatory region 644901	585 bp distal
Rr644902	regulatory region 644902	512 bp distal
Rr644903	regulatory region 644903	within coordinates
Tmem147	transmembrane protein 147	mRNA-UTR
Tmem147os	transmembrane protein 147, opposite strand	128 bp upstream
Tssr65802	transcription start site region 65802	62 bp upstream
Tssr65803	transcription start site region 65803	208 bp upstream
Tssr65804	transcription start site region 65804	294 bp upstream
Tssr65805	transcription start site region 65805	1673 bp upstream
Tssr71842	transcription start site region 71842	664 bp upstream
Tssr71843	transcription start site region 71843	48 bp upstream
Tssr71844	transcription start site region 71844	within coordinates
Tssr71845	transcription start site region 71845	4 bp downstream