rs31885557 SNP Detail

Summary

• ID
  rs31885557
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:129229068 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGAGG GGTTGGGGGA TCCCGGGGTC
  K
  TGCGTTGCAG GAGGGGCGGG GAGGC                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J
ss45582491	mCV22717103	ABI	CRAMUS_MOUSE	f	SNP	T	T	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J
rs31885557					SNP	T	T	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:129229068 () rs orientation: forward

Symbol	Name	Function Class
Rbbp4	retinoblastoma binding protein 4, chromatin remodeling factor	mRNA-UTR
Rr367701	regulatory region 367701	84 bp upstream
Rr367702	regulatory region 367702	532 bp upstream
Rr600200	regulatory region 600200	46 bp proximal
Rr600201	regulatory region 600201	85 bp proximal
Rr600202	regulatory region 600202	1466 bp proximal
Tssr39141	transcription start site region 39141	318 bp upstream
Tssr39142	transcription start site region 39142	687 bp upstream
Tssr39143	transcription start site region 39143	741 bp upstream
Tssr43492	transcription start site region 43492	11 bp upstream
Tssr43493	transcription start site region 43493	22 bp downstream
Tssr43494	transcription start site region 43494	49 bp downstream
Zbtb8os	zinc finger and BTB domain containing 8 opposite strand	257 bp upstream