rs31886873 SNP Detail

Summary

• ID
  rs31886873
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:34525064 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTCCT CTCTTCCACT CCGACCGACC
  K
  TTGATTTCAT CATCGGGTGG CTGTT                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	AKR/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	SM/J	WSB/EiJ
ss45081050	mCV23084332	ABI	CRAMUS_MOUSE	f	SNP	T				G		T
ss51237325	NES14284675	PERLEGEN	MM_PANEL2	f	SNP		T	G	T		T		T		G		T
ss148889160	ENSMUSSNP2152920	ENSEMBL	ENSEMBL_Sanger	f	SNP	T						T
ss319682283	CHEV_1_34542828	CHEVERUD	SCREENING_POP	f	SNP									T		T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	AKR/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	SM/J	WSB/EiJ
rs31886873					SNP	T	T	G	T	G	T	T	T	T	G	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51237325	NES14284675	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:34525064 () rs orientation: forward

Symbol	Name	Function Class
4930568A12Rik	RIKEN cDNA 4930568A12 gene	within coordinates
Cpgi120	CpG island 120	within coordinates
Gm32566	predicted gene, 32566	2 bp downstream
Rr409037	regulatory region 409037	1534 bp distal
Rr409038	regulatory region 409038	1084 bp distal
Rr409039	regulatory region 409039	61 bp distal
Rr409040	regulatory region 409040	within coordinates
Rr409041	regulatory region 409041	219 bp proximal
Rr409042	regulatory region 409042	1614 bp proximal
Tssr36	transcription start site region 36	654 bp downstream
Tssr11221	transcription start site region 11221	37 bp upstream
Tssr11222	transcription start site region 11222	16 bp upstream