rs31888133 SNP Detail

Summary

• ID
  rs31888133
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:30736248 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCAGAGCACA GGCACCTCCC
  ACCCACACTA TGGCAACAAG CACCTGCCTG CACCCCCCGC CCCCCAAGGC TGGACCAGCT
  GCTCAGCCCA GGCGGGTCCC TCTTTTGGAC CTCCGCTAAC AACCCGAGAG CAGGGGACAG
  GATTACACCG ACTTTGTCCC TCCAGCCTAG AGATACTTAT TTAAAATATC CTGAACATCC
  W
  CTCTACTTTT GGACCAAAAA ATAGCGGGGC ATTCTCTTCT TAATTCTAAT TTAATTTAAA
  ATGTTGGACA CAGGGTCTGC CATGTACCCC ACGCCGGCCT CATGTTCTCA CTCCTGAGCT
  CTGACGTCAC ACAAAGGTTA AGGGGTCATC TGCTGCCTTA GTCTCAGCTC AGCCTCTTTC
  CACACACCTG CTGCCACCAC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss46080116	mCV22838210	ABI	CRAMUS_MOUSE	f	SNP	A	T	T
ss148696881	ENSMUSSNP1826523	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	T	T
ss322138597	CHEV_7_31821842	CHEVERUD	SCREENING_POP	f	SNP				A	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs31888133					SNP	A	T	T	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:30736248 () rs orientation: forward

Symbol	Name	Function Class
Fxyd5	FXYD domain-containing ion transport regulator 5	within coordinates
Gm38984	predicted gene, 38984	20 bp upstream
Gm71772	predicted gene, 71772	166 bp upstream
Tssr2191	transcription start site region 2191	1338 bp upstream
Tssr65830	transcription start site region 65830	1555 bp downstream
Tssr65831	transcription start site region 65831	165 bp upstream
Tssr65832	transcription start site region 65832	585 bp upstream
Tssr65833	transcription start site region 65833	982 bp upstream
Tssr65834	transcription start site region 65834	1036 bp upstream
Tssr71891	transcription start site region 71891	324 bp upstream
Tssr71892	transcription start site region 71892	195 bp downstream
Tssr71893	transcription start site region 71893	1037 bp downstream
Tssr71894	transcription start site region 71894	1058 bp downstream
Tssr71895	transcription start site region 71895	1071 bp downstream
Tssr71896	transcription start site region 71896	1101 bp downstream