rs31888438 SNP Detail

Summary

• ID
  rs31888438
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr18:42066081 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGACTCCACC TAGAGCCCAT
  CTCAGTCTCG GATAACAGGG GGGACAAGTG ACCCTTATAT ATAGATGGCA CGGCAGCAAT
  AGCCCTAAGT ATTGATATCC AGACACACTG TGGCCTCACT ACATGCTGTG AAGGACTTGC
  AAATGGCCCA GGACTGATGG AGGCCACTAA GCAAATTCTC AGATGCTCCT GTCATCTCTG
  K
  GGCTGGCCTC CTTGAGTTGA TAGATTCCCA TCAGACGCCC GCTGCATGCT CCCATGCAGG
  GCAGTATCAA GCGAAATATT TTCCTCGTTG TAATCTCTGT TCAGTCCCTA GAAATCGATG
  CTTTCCCAGG TGGAGAGGAC AAGGAAAGCT ACAAAGGCAG AACTGTACAA GTCAGAGCCT
  TAAATTATTT AAGAATTGAG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	NOD/ShiLtJ	PWD/PhJ
ss49286592	NES12700705	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	T	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	NOD/ShiLtJ	PWD/PhJ
rs31888438					SNP	G	G	G	G	T	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49286592	NES12700705	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:42066081 () rs orientation: forward

Symbol	Name	Function Class
D18Mit104	DNA segment, Chr 18, Massachusetts Institute of Technology 104	349 bp distal
Prelid2	PRELI domain containing 2	Intron