rs31888440 SNP Detail

Summary

• ID
  rs31888440
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr18:42065936 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCAGTGACT CCGGATAGCC
  ATGTTCCTTT TCTGAAGACT GAGCCATGAC TCTTCTTCTA GCTGGATATC AGGTACCTTT
  AAAATACTCA CCTGCCCAAC AGAGAGAAAA CAGCATCCTC AATTTCAGAA GAGCAAGCTA
  CATGAAGACT CCACCTAGAG CCCATCTCAG TCTCGGATAA CAGGGGGGAC AAGTGACCCT
  K
  ATATATAGAT GGCACGGCAG CAATAGCCCT AAGTATTGAT ATCCAGACAC ACTGTGGCCT
  CACTACATGC TGTGAAGGAC TTGCAAATGG CCCAGGACTG ATGGAGGCCA CTAAGCAAAT
  TCTCAGATGC TCCTGTCATC TCTGGGGCTG GCCTCCTTGA GTTGATAGAT TCCCATCAGA
  CGCCCGCTGC ATGCTCCCAT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss49286594	NES12700701	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	G	T	G	T	T		T	T		G
ss325596254	CHEV_18_42092525	CHEVERUD	SCREENING_POP	f	SNP										T			G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs31888440					SNP	T	T	T	T	G	T	G	T	T	T	T	T	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49286594	NES12700701	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:42065936 () rs orientation: forward

Symbol	Name	Function Class
D18Mit104	DNA segment, Chr 18, Massachusetts Institute of Technology 104	204 bp distal
Prelid2	PRELI domain containing 2	Intron