rs31888442 SNP Detail

Summary

• ID
  rs31888442
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr18:42065464 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACTAAGCAA GGTAGGTGAG
  TCTGTGTACG AGCATCTCCA TAAACCTGCA GGCCCACTAG CGGGGTCACG TTCGTGATAA
  CATCAAGCAA AATGTTTTCC TTATTTAAAC TCTGTTGAAT ACCTAGACTG CCTTTAAAGG
  TCCAAAAGAA TAGTCAACCA GCTGGTGACA TTCACTGCCT TTGAAGAGAG CAAGAAAATA
  Y
  CAGAATTTGG AGAGCACCTG GAAAAGAGTT GTGTTCTGTC AAAAAGAAAA AATACATTCA
  TCTACTTAAA AAATAAAGTG AAATATGTGT GTAATGGACA GAGACCATAA CAATGAAATT
  GTGTGCTTGT TTATTGATCC CCTCCCCCAA CACACATACA CACACACACA CACACACACA
  CACACACACA CGTGATCTTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss49286596	NES12700696	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	C	T	C	T	T	C		C	T	T		C
ss325596247	CHEV_18_42092053	CHEVERUD	SCREENING_POP	f	SNP											T				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs31888442					SNP	T	T	T	T	C	T	C	T	T	C	T	C	T	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49286596	NES12700696	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:42065464 () rs orientation: forward

Symbol	Name	Function Class
D18Mit104	DNA segment, Chr 18, Massachusetts Institute of Technology 104	120 bp proximal
Prelid2	PRELI domain containing 2	Intron