rs31888456 SNP Detail

Summary

• ID
  rs31888456
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:42012251 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTTTAAAGT GGGATGTCTG
  GGTGTCAGAT TGAAAAAGGA TGGACTTGAT AGTCTACTGA TTGGATTTCA GAAGTGATTT
  GTCTGGGGAT GTGGGGATGT GGAGATGTGA AACCTGGGAG TTGGCCTGGA GCAAAAGTAA
  AATTGAGATA TGCCCAAACC CCCTCAAATC TCATCCGAGA GGAGTGGGGC CGCTCTCTCC
  M
  TACTCTCAGC CTACATGCTC CTACATGTCC TCTAAGGAGA GTCATGTAGC CTGTGGCCAG
  ATTACAGGCT CAATGTTTCC CCCACCCCTC GATAAGAACC TGTCTGCCAG ATTCTTGGTA
  TTCCTCTTTA TGTAAATGAA GCATTCTCAC GTCTCACCCT AGTCAATAGT GTATATATAC
  CTTGGAATTC CCTACCCACT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49286842	NES12703042	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	A	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31888456					SNP	C	C	C	C	C	C	A	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49286842	NES12703042	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:42012251 () rs orientation: forward

Symbol	Name	Function Class
Prelid2	PRELI domain containing 2	within coordinates
Rr393607	regulatory region 393607	within coordinates