rs31888460 SNP Detail

Summary

• ID
  rs31888460
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:42011317 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAAGATATC ATATTATGTA
  TGATAAATAG ATACATGCAA GAAGAGGCTT TGATTTCTAG AAGTCAGGAT GAAACCTGTT
  CTGCTGACTG ATATAAAGGT AGCTGTATAC CCAACCACGT TGAAACCTCA GCTATCTGCT
  TCCCCAGTGT CCTAACACTG ACTGGATCCA TCTCTACCCA AAGACAAGCT TGGGAGCCCA
  Y
  CTAAGACTTG GTCAACCAGA ACTCCGAGAG TGAGCTCACT CTTCTGTGCT TTACACTCCC
  CGGGATGGTT CTGGTGCTCA CTAAAACTTC AAAACCTCTA ATTCAAACTT TGGAAGCTAG
  CAGGCATATG CCTTTCCAGT GTTAGCACAG GCCCCCTTAA TTCCTCAACG GAACTGAGCT
  GACTTCACAT CTTACTCCCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49286846	NES12703073	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31888460					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49286846	NES12703073	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:42011317 () rs orientation: forward

Symbol	Name	Function Class
Prelid2	PRELI domain containing 2	within coordinates
Rr393607	regulatory region 393607	94 bp upstream