rs31888463 SNP Detail

Summary

• ID
  rs31888463
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:42011045 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATAGTAATAA TAACAGCAAC
  TTCAAAATAT TTTTTAAATG GTTAATTATT TTGTACTGAG TTGCACTCAT AGCTATCCTG
  GGTCACACGG GCCAGGCTGA ACATGGCTGA AAGACAACAG GCCAGACTGT AAACTTTTTA
  AACTCACTCA TTTTTATCAA CAATGCTTTA AATCCAAACT GACTTAGAGC CACAAATTAG
  Y
  ATGACTCTTG CCTCCTCTCT TCATATGAGT TTGCTGTAAC CTGGAGCTTG TCCACATTAA
  ACTAACAGAA GAAAAGATAT CATATTATGT ATGATAAATA GATACATGCA AGAAGAGGCT
  TTGATTTCTA GAAGTCAGGA TGAAACCTGT TCTGCTGACT GATATAAAGG TAGCTGTATA
  CCCAACCACG TTGAAACCTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49286849	NES12703070	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31888463					SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49286849	NES12703070	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:42011045 () rs orientation: forward

Symbol	Name	Function Class
Prelid2	PRELI domain containing 2	within coordinates
Rr393607	regulatory region 393607	366 bp upstream