rs31888785 SNP Detail

Summary

• ID
  rs31888785
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:78138965 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTTTTGTTTT TGTTTTTTGT TATCAGCTGA GAATGCATTA
  GCAGAGATGG TAGACGGGGT GGTGTGTTGA TAGGGCTGTC TAGATCTTTC CGTCGACTGC
  Y
  CACCTGTCCC TCCTCACACA GAACCTCCTG AGCCTGCCGG TCTGCGTGCT GATGGACCCC
  GACGTCAGGA TCTTCTTCTA TCAGTCTGCA TACGATGCT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss39336965	mCV27572933	ABI	CRAMUS_MOUSE	f	SNP	C	C	T
ss148180905	ENSMUSSNP3557568	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs31888785					SNP	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:78138965 () rs orientation: forward

Symbol	Name	Function Class
Cpgi7285	CpG island 7285	within coordinates
Ncf4	neutrophil cytosolic factor 4	within coordinates
Rr505234	regulatory region 505234	199 bp proximal
Rr505235	regulatory region 505235	1663 bp proximal
Tssr131904	transcription start site region 131904	1532 bp downstream
Tssr131905	transcription start site region 131905	1462 bp downstream
Tssr131906	transcription start site region 131906	99 bp upstream