rs31889090 SNP Detail

Summary

• ID
  rs31889090
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:42010092 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTAAGAACCA ATACCTTAGA
  TTATCGCCCC TTCTCCTGCC CTCCCTCCAT CACACACACA CATACACACA CACATTGGCA
  TATAAATGCA TACATATATA TATGGTGTAT GCACACATGC AAAAACCAAG AGAAAATTAA
  GAATTGTAAA ACTCTCAGCA ATCCTGCCTC AGCCTCCCAA ATGCCAGCCC CTTTCCATTT
  W
  ATTTTATCAC TTTTTCCATC TCATGAGAAC AGTACATTCC CCTCCTACAA CTTATTTTTC
  CTAAAGCTTT TTTTGAGGAA GTAAAAAGGC TCCATCAAGA CAGAGGGAAT TTAAACTACA
  AAAACATTGT AAAAATGGTC AAGAAAATGG GGAGGGGAGA AAATAAGGTT GTAGCTGAGC
  TACGAAATCA AAGCCTCAAA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49286856	NES12703143	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	A	T	T	T	A	T	T	A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31889090					SNP	T	T	T	T	T	T	A	T	T	T	A	T	T	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49286856	NES12703143	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:42010092 () rs orientation: forward

Symbol	Name	Function Class
Prelid2	PRELI domain containing 2	within coordinates
Rr393607	regulatory region 393607	1319 bp upstream