rs31889114 SNP Detail

Summary

• ID
  rs31889114
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr18:42065084 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTGTCTATA GATAATCTTG
  CAACAAATAC AACACTTAAA GATTCCACTG AGAGAATCCA CTCACATATC ACATTAGAGT
  CATATGTAGA GGACATACAA CTCACTCACG TATCACATTA GAGTCATCTA TAGAGGACAT
  ACATCTCATG GGTATTAATT ATACTCGCCT TTACAAGAAA GAGAAACTAG ATACCATCAG
  Y
  GTGTCTGCCA CAGAGGCAGG GACTAAATAA AACGTAGTGA AGTTGAATGC CGTGCAGAGG
  AAGCAGCTAG CTCTCTGTAT ATCAAATAGG TAAAACTCAG TAGCAGTCGA GTAAACATAA
  AAGATAAGTG CACAAAAACT CAGGCAATGC AAAAGCACAA GTGTAAAAAA AGATATACAA
  ACTAAGCAAG GTAGGTGAGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss49286598	NES12700691	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	T	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs31889114					SNP	C	C	C	C	C	T	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49286598	NES12700691	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:42065084 () rs orientation: forward

Symbol	Name	Function Class
D18Mit104	DNA segment, Chr 18, Massachusetts Institute of Technology 104	500 bp proximal
Prelid2	PRELI domain containing 2	Intron