rs31889115 SNP Detail

Summary

• ID
  rs31889115
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr18:42065027 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGAGTTTAC ATATTTGTGA
  AAACTTAAAG AGCTGAATGC TAGAAAAGGT AAATTTGATT GTCTATAGAT AATCTTGCAA
  CAAATACAAC ACTTAAAGAT TCCACTGAGA GAATCCACTC ACATATCACA TTAGAGTCAT
  ATGTAGAGGA CATACAACTC ACTCACGTAT CACATTAGAG TCATCTATAG AGGACATACA
  Y
  CTCATGGGTA TTAATTATAC TCGCCTTTAC AAGAAAGAGA AACTAGATAC CATCAGCGTG
  TCTGCCACAG AGGCAGGGAC TAAATAAAAC GTAGTGAAGT TGAATGCCGT GCAGAGGAAG
  CAGCTAGCTC TCTGTATATC AAATAGGTAA AACTCAGTAG CAGTCGAGTA AACATAAAAG
  ATAAGTGCAC AAAAACTCAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss49286599	NES12700690	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	C	T	C	T	T	C		C	T	T		C
ss325596244	CHEV_18_42091616	CHEVERUD	SCREENING_POP	f	SNP											T				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs31889115					SNP	T	T	T	T	C	T	C	T	T	C	T	C	T	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49286599	NES12700690	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:42065027 () rs orientation: forward

Symbol	Name	Function Class
D18Mit104	DNA segment, Chr 18, Massachusetts Institute of Technology 104	557 bp proximal
Prelid2	PRELI domain containing 2	Intron