rs31889964 SNP Detail

Summary

• ID
  rs31889964
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:131230126 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAGGTAGGG TGTGTACCTA
  GGCTGCAAAT TACTAGCCAA GTACCTCATC CCAGTATACT TCAAAAATAC CTTTATGCTT
  CTTGTTTGTT CTCCTTTCCA TTGAGATGAA TGACATTTCT GAGACACAGA GGGGTGAGGC
  GTGCTGGTCC TCACTGATCA TCGGCGTTAA TTGCGTTGCA GGGCGCGTTT GTTCTGGCAC
  S
  GACGTCTGTC TGCAGACGCA CCTATGAGCA CGGCTCGCAG GCGCCGTGCT TGCCATTTCG
  GGAATTTGCT TGGCTTTGTG TTCCTTTAAC CAAAAGGTGG ACCTGGCTGG ATTCCAACAC
  TTTTTGGAGG ACAGAAGGGA GCATGCAAAT GAACCAGCCA CTTTGGCACC TGTTCTGGAG
  ACTCTGAGTG AAGCTGGGGG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46080129	mCV24302224	ABI	CRAMUS_MOUSE	f	SNP		G	C					G		G
ss61066487	NES16063269	PERLEGEN	MM_PANEL2	f	SNP	G		C	G	G	G	G		G	G	G	G	G	G	G	G	G
ss145934720	ENSMUSSNP2060940	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	C							G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31889964					SNP	G	G	C	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61066487	NES16063269	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:131230126 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19823	CpG island 19823	within coordinates
Rr656477	regulatory region 656477	within coordinates