rs31890093 SNP Detail

Summary

• ID
  rs31890093
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:118086230 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTTCTCCCTC CCAACTCTTC CTTTCACATA CACCTTAAGA
  CCTCCTCCCC ACAAATCCTC AGAGAATATT TGCATCCATT CACACTGTCC TCTCCTTCAT
  Y
  TGCAAAACGC ATATTCTCCC AGCCCATGAG CATTCCAGGA AGGCTCCGAG CTGGGCAGTG
  GGAATTACTG AGGTGTCTGG ACGCAAAAGA GCTGAGTCA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss46080039	mCV27568662	ABI	CRAMUS_MOUSE	f	SNP			C				T
ss47171643	NES11585854	PERLEGEN	MM_PANEL2	f	SNP	C			T	C	C		C		T	T	T	T	C
ss145780787	ENSMUSSNP1133148	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C						C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs31890093					SNP	C	C	C	T	C	C	T	C	C	T	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47171643	NES11585854	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:118086230 () rs orientation: forward

Symbol	Name	Function Class
Itpripl2	inositol 1,4,5-triphosphate receptor interacting protein-like 2	within coordinates
Rr381380	regulatory region 381380	within coordinates
Rr654485	regulatory region 654485	1318 bp proximal
Rr654486	regulatory region 654486	1515 bp proximal
Tssr74438	transcription start site region 74438	1350 bp upstream
Tssr74439	transcription start site region 74439	529 bp downstream
Tssr74440	transcription start site region 74440	1246 bp downstream