rs31890344 SNP Detail

Summary

• ID
  rs31890344
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:86236585 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGGTC AGGGGCTAAG CAGTCTCATG
  Y
  AGTTCGCTAA GCAGCTTTGA CTCTC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J
ss45081459	mCV22889681	ABI	CRAMUS_MOUSE	f	SNP	T	T	C
ss144875445	ENSMUSSNP1148388	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J
rs31890344					SNP	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:86236585 () rs orientation: forward

Symbol	Name	Function Class
B3gnt7	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 7	1558 bp downstream
Rr366828	regulatory region 366828	within coordinates
Rr414520	regulatory region 414520	823 bp distal
Rr414521	regulatory region 414521	1243 bp proximal
Rr414522	regulatory region 414522	1802 bp proximal
Tssr7740	transcription start site region 7740	285 bp downstream
Tssr12766	transcription start site region 12766	460 bp upstream