rs31890971 SNP Detail

Summary

• ID
  rs31890971
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:193906911 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCTGC AATAGCAATT GGGGATGTTT
  K
  TTTTTCAGAT ATTTGCTTGA TAAAT                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss45081968	mCV24146341	ABI	CRAMUS_MOUSE	f	SNP	T	T	G					T		G
ss60365281	NES15864997	PERLEGEN	MM_PANEL2	f	SNP	T		G	T	T	T	G		G	G	T	T	G	G	T	T	G
ss146537848	ENSMUSSNP4216289	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	G							G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31890971					SNP	T	T	G	T	T	T	G	T	G	G	T	T	G	G	T	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60365281	NES15864997	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:193906911 () rs orientation: forward

Symbol	Name	Function Class
4930503O07Rik	RIKEN cDNA 4930503O07 gene	1844 bp upstream
Rr914	regulatory region 914	1679 bp proximal
Rr426624	regulatory region 426624	1482 bp distal
Rr426625	regulatory region 426625	1078 bp distal
Rr426626	regulatory region 426626	1427 bp distal
Rr426627	regulatory region 426627	1301 bp distal
Rr426628	regulatory region 426628	273 bp distal
Rr426629	regulatory region 426629	1129 bp proximal
Rr426630	regulatory region 426630	1782 bp proximal