rs31891563 SNP Detail

Summary

• ID
  rs31891563
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:45110845 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTTCAACCC GACAGGCCTG
  GACAAGGCTG TAAAGGTGGA AAAAGATAAA ACCCGGAAGC CACAGGGGAC AAGGAAAGGA
  GAGAGGTACA CAAATTTGAG TGGCAGAATC TCAGACTGGG GGATTGAGGG TGGAACAAAA
  GACCAAGTCC CCTTAAAATG GCTTCCTCTT CCCTTCTGGC ACCTCTGGTA ATCCAGCATC
  K
  AGGAGTCTGC TCCAGTTCCG GTGGCCTCCT CCCTCCCTCC CTCCCTCCCT CCCTCCCTCC
  CTCCCTCCCT CCCTCCCTCC CTCCCTCCCT CCATCTTGTC CTTTCAGAAT CTGCAGGATC
  TCTGGAATTC CAGGCTCCTG TCCCCAGGGC TGAAGACAGC TCTGCAGCTG CGGTGTGTAC
  TCTTTATGGA GCGGGTCCCT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	PWD/PhJ
ss46080161	mCV22696784	ABI	CRAMUS_MOUSE	f	SNP	T	G	T
ss61003428	NES16114219	PERLEGEN	MM_PANEL2	f	SNP	T		T	T	T	T	G	T	T	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	PWD/PhJ
rs31891563					SNP	T	G	T	T	T	T	G	T	T	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61003428	NES16114219	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:45110845 () rs orientation: forward

Symbol	Name	Function Class
Bax	BCL2-associated X protein	276 bp downstream
Cpgi19060	CpG island 19060	1991 bp distal
Cpgi19061	CpG island 19061	1287 bp distal
Ftl1	ferritin light polypeptide 1	1537 bp upstream
Gm10252	predicted gene 10252	1121 bp downstream
Gm73429	predicted gene, 73429	within coordinates
Gm73431	predicted gene, 73431	within coordinates
Rr380754	regulatory region 380754	within coordinates
Rr646450	regulatory region 646450	1047 bp distal
Rr646451	regulatory region 646451	1312 bp distal
Rr646452	regulatory region 646452	402 bp distal
Rr646453	regulatory region 646453	within coordinates
Rr646454	regulatory region 646454	32 bp proximal
Rr646455	regulatory region 646455	1618 bp proximal
Tssr66541	transcription start site region 66541	1733 bp downstream
Tssr66542	transcription start site region 66542	321 bp downstream
Tssr72395	transcription start site region 72395	1996 bp upstream
Tssr72396	transcription start site region 72396	1964 bp upstream
Tssr72397	transcription start site region 72397	1690 bp upstream
Tssr72398	transcription start site region 72398	1540 bp upstream
Tssr72399	transcription start site region 72399	475 bp upstream
Tssr72400	transcription start site region 72400	444 bp upstream