rs31891747 SNP Detail

Summary

• ID
  rs31891747
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:136012124 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CAAGT CCTTCCATTT GGAGGATTCT
  K
  AGTGAATGCA GCATAGCCAA CGCTG                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45582920	mCV25110923	ABI	CRAMUS_MOUSE	f	SNP	T	T	G	T
ss147564575	ENSMUSSNP2415760	ENSEMBL	ENSEMBL_Sanger	f	SNP		T		T
ss321354903	CHEV_4_135840728	CHEVERUD	SCREENING_POP	f	SNP					T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31891747					SNP	T	T	G	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:136012124 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15107	CpG island 15107	1007 bp proximal
Rr398613	regulatory region 398613	432 bp upstream
Rr602339	regulatory region 602339	1411 bp distal
Rr602340	regulatory region 602340	237 bp distal
Rr602341	regulatory region 602341	764 bp proximal
Rr602342	regulatory region 602342	1265 bp proximal
Tssr39694	transcription start site region 39694	161 bp downstream
Tssr39695	transcription start site region 39695	127 bp downstream
Tssr39696	transcription start site region 39696	96 bp downstream
Tssr39697	transcription start site region 39697	1248 bp upstream
Tssr39698	transcription start site region 39698	1302 bp upstream
Tssr39699	transcription start site region 39699	1365 bp upstream
Zfp46	zinc finger protein 46	mRNA-UTR