rs31892185 SNP Detail

Summary

• ID
  rs31892185
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:28856080 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTTTC TTCCACTTTA GGATTAGATT
  W
  TCAGCACGTC TTCACATCCA CTCTC                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	AKR/J	C57BL/6J	DBA/2J	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
ss46080198	mCV23832878	ABI	CRAMUS_MOUSE	f	SNP	A	A		T	T
ss60987101	NES16140740	PERLEGEN	MM_PANEL2	f	SNP		T	T				T	A	A
ss148642752	ENSMUSSNP4748697	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A			T
ss322127384	CHEV_7_29941674	CHEVERUD	SCREENING_POP	f	SNP						A				A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	AKR/J	C57BL/6J	DBA/2J	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
rs31892185					SNP	A	A	T	T	T	A	T	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60987101	NES16140740	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:28856080 () rs orientation: forward

Symbol	Name	Function Class
1110035H17Rik	RIKEN cDNA 1110035H17 gene	within coordinates
Cpgi18740	CpG island 18740	40 bp distal
Fam98c	family with sequence similarity 98, member C	427 bp upstream
Gm73440	predicted gene, 73440	within coordinates
Rr400219	regulatory region 400219	243 bp downstream
Rr644491	regulatory region 644491	587 bp distal
Rr644492	regulatory region 644492	932 bp distal
Rr644493	regulatory region 644493	within coordinates
Rr644494	regulatory region 644494	438 bp distal
Rr644495	regulatory region 644495	313 bp distal
Rr644496	regulatory region 644496	655 bp proximal
Tssr65599	transcription start site region 65599	987 bp downstream
Tssr65600	transcription start site region 65600	964 bp downstream
Tssr65601	transcription start site region 65601	901 bp downstream
Tssr71610	transcription start site region 71610	1039 bp upstream
Tssr71611	transcription start site region 71611	1024 bp upstream
Tssr71612	transcription start site region 71612	925 bp upstream
Tssr71613	transcription start site region 71613	699 bp upstream
Tssr71614	transcription start site region 71614	660 bp upstream
Tssr71615	transcription start site region 71615	445 bp upstream