rs31893004 SNP Detail

Summary

• ID
  rs31893004
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:6396768 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGGCTCTGA ATGAAGTCAC
  CATGATTTAG GAAGTTGAAA CCACACATTC TTCATGTGGT AAAACTTCTA AGTACTATCA
  TTGCACATTC ACCAGTTTAA AGTCTGGTTT AAAATACATT AAGTAGAATT GTACTTGATG
  GAGAGGAAAA GGCACTTAAT ACTGCAATTT CCAGAACATA ATTTGTCTGT CTTCCCCTCC
  K
  GTGATAATAC TGCTACACTG TTCGTTCATC CACATGCATG TCACAGCACC TGAAAGACAT
  CTCTGTTAGC AGGTCAACCA AATGCAGATG TGCTGCCTGC CATAGGAGGT AATCAGCATA
  CCCGCGCTCC TATTATACAC TATGTAAAGG TTTGTTGTTG TTTTGTCAAT TCAGGGTTTT
  ATTTTTTTTC CTTTTTTTTA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J
ss45583105	mCV22884913	ABI	CRAMUS_MOUSE	f	SNP	T	G	G
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J
rs31893004					SNP	T	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:6396768 () rs orientation: forward

Symbol	Name	Function Class
Nsmaf	neutral sphingomyelinase (N-SMase) activation associated factor	within coordinates
Sdcbp	syndecan binding protein	648 bp downstream
Tssr36400	transcription start site region 36400	1858 bp downstream
Tssr36401	transcription start site region 36401	1802 bp downstream