rs31894291 SNP Detail

Summary

• ID
  rs31894291
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:140540448 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCCTC TCCTCTTCAG AGGTCGGGCA
  Y
  CGCCCCAACC CTTCTCATCC TCCTT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45582959	mCV24067168	ABI	CRAMUS_MOUSE	f	SNP	C	T	T	C
ss147713826	ENSMUSSNP5827638	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T		C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs31894291					SNP	C	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:140540448 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15197	CpG island 15197	1463 bp proximal
Gm13032	predicted gene 13032	within coordinates
Padi1	peptidyl arginine deiminase, type I	mRNA-UTR
Rr603555	regulatory region 603555	167 bp distal
Rr603556	regulatory region 603556	479 bp distal
Tssr44282	transcription start site region 44282	1001 bp downstream