rs31894376 SNP Detail

Summary

• ID
  rs31894376
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:64994175 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AACCC CCACTGGTCT TTCATCTTGC
  W
  GTCCACCCAT TCAACAAGAA CTTCC                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
ss45082223	mCV23030154	ABI	CRAMUS_MOUSE	f	SNP	T	T	T	A
ss149168852	ENSMUSSNP4693628	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T
ss319746077	CHEV_1_65001590	CHEVERUD	SCREENING_POP	f	SNP					T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
rs31894376					SNP	T	T	T	A	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:64994175 () rs orientation: forward

Symbol	Name	Function Class
Cpgi329	CpG island 329	1409 bp proximal
Gm51627	predicted gene, 51627	1486 bp upstream
Plekhm3	pleckstrin homology domain containing, family M, member 3	within coordinates
Rr412356	regulatory region 412356	1222 bp proximal
Rr412357	regulatory region 412357	1497 bp proximal
Rr412358	regulatory region 412358	1729 bp proximal
Rr412359	regulatory region 412359	1798 bp proximal
Tssr11945	transcription start site region 11945	1695 bp downstream
Tssr11946	transcription start site region 11946	1715 bp downstream
Tssr11947	transcription start site region 11947	1791 bp downstream
Tssr11948	transcription start site region 11948	1807 bp downstream