rs31895719 SNP Detail

Summary

• ID
  rs31895719
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:66965219 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGGCACAGCA CCCCTAGAGC
  ACTGTACAGC CGTTTATGAG AAGCGCTGCC AAGCGTTTGG GTGGAATACT TACGTGGTGG
  ATGGTCATGA TGTTGAAGCT CTCTGCCAGG CCTTTTGGAA AGCAGCTCAA GTCAAGAATA
  AGCCTACTGC CCTGATTGCC AAGACCTTCA AGGGTAGAGG TATTCCAAAT GTCGAGGATG
  Y
  GGAAAATTGG CATGGAAAGC CTATGCCAAA AGACAGAGCT GATGGGATTG TCAAATTAAT
  TGAGAATCGG ATACAGACAA ACCGAAATCT CACACCGAAA CCCCCCATTG AAGACTCGCC
  CAGGATCAGC ATGTCCAATA CAAAAATGAC CTCTCTGCCT GTCTACAAAC TGGGAGACAT
  GATAGCTACT CGTGAAGCAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47601629	NES11425488	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31895719					SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47601629	NES11425488	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:66965219 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20395	CpG island 20395	184 bp distal
Gm63911	predicted gene, 63911	1545 bp upstream
Tktl2	transketolase-like 2	within coordinates
Tssr77575	transcription start site region 77575	824 bp downstream
Tssr77576	transcription start site region 77576	803 bp downstream