rs31895722 SNP Detail

Summary

• ID
  rs31895722
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:66965244 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACAGCCGTTT ATGAGAAGCG
  CTGCCAAGCG TTTGGGTGGA ATACTTACGT GGTGGATGGT CATGATGTTG AAGCTCTCTG
  CCAGGCCTTT TGGAAAGCAG CTCAAGTCAA GAATAAGCCT ACTGCCCTGA TTGCCAAGAC
  CTTCAAGGGT AGAGGTATTC CAAATGTCGA GGATGCGGAA AATTGGCATG GAAAGCCTAT
  R
  CCAAAAGACA GAGCTGATGG GATTGTCAAA TTAATTGAGA ATCGGATACA GACAAACCGA
  AATCTCACAC CGAAACCCCC CATTGAAGAC TCGCCCAGGA TCAGCATGTC CAATACAAAA
  ATGACCTCTC TGCCTGTCTA CAAACTGGGA GACATGATAG CTACTCGTGA AGCATACGGC
  TTGGCTCTGG CTAAATTGGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46224525	mCV22601567	ABI	CRAMUS_MOUSE	f	SNP		A					G
ss47601632	NES11425489	PERLEGEN	MM_PANEL2	f	SNP	G	A	G	G	G	G		A	G	G	G	G	A	G	G	G
ss145053582	ENSMUSSNP508318	ENSEMBL	ENSEMBL_Sanger	f	SNP		A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31895722					SNP	G	A	G	G	G	G	G	A	G	G	G	G	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47601632	NES11425489	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:66965244 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20395	CpG island 20395	209 bp distal
Gm63911	predicted gene, 63911	1570 bp upstream
Tktl2	transketolase-like 2	within coordinates
Tssr77575	transcription start site region 77575	849 bp downstream
Tssr77576	transcription start site region 77576	828 bp downstream