rs31895728 SNP Detail

Summary

• ID
  rs31895728
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:45110333 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTAGGGAGAG CAAGAACTCA
  GGACCCAGAA ACAGACAGTC AGTCTTACGC AGAACAGTTG GGGCATGCAA GGCCCAACTG
  GACTTTTGAG GACAGGACGG GCTCATACCA GGGTCTAATC TCAGAAGCCT GGGAAGAGAG
  CAAAGGGAAA CGAGCCCAAT CATGAAAAGG GGCTAAAGGA AGAAACAGTA AGATGGGTCA
  W
  GGGAGCCACG CGGAGCAGGA AGAATGTGCT GCTGAGGCCC TTAGTGGAAG GGGTAGCAAG
  GCCAGTTCTG CTGAGTCACG CTGAGCTCAG CTAGGCAGTG GGGCGGGCGG CAGGCCACAC
  CCGGGCTGAC AGCCAGAAGT CCCCCGGCTA AGGGGCTTGT GGTCTGTTTT CCCTGTGTGG
  TCAGGCAGCT GTACGGCTCT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J
ss46080731	mCV22696774	ABI	CRAMUS_MOUSE	f	SNP	T	A	A
ss149135507	ENSMUSSNP498301	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J
rs31895728					SNP	T	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:45110333 () rs orientation: forward

Symbol	Name	Function Class
Bax	BCL2-associated X protein	788 bp downstream
Cpgi19060	CpG island 19060	1479 bp distal
Cpgi19061	CpG island 19061	775 bp distal
Ftl1	ferritin light polypeptide 1	1025 bp upstream
Gm10252	predicted gene 10252	609 bp downstream
Gm73429	predicted gene, 73429	within coordinates
Gm73431	predicted gene, 73431	100 bp upstream
Rr380754	regulatory region 380754	within coordinates
Rr646450	regulatory region 646450	535 bp distal
Rr646451	regulatory region 646451	800 bp distal
Rr646452	regulatory region 646452	within coordinates
Rr646453	regulatory region 646453	111 bp proximal
Rr646454	regulatory region 646454	544 bp proximal
Tssr66541	transcription start site region 66541	1221 bp downstream
Tssr66542	transcription start site region 66542	155 bp upstream
Tssr72395	transcription start site region 72395	1484 bp upstream
Tssr72396	transcription start site region 72396	1452 bp upstream
Tssr72397	transcription start site region 72397	1178 bp upstream
Tssr72398	transcription start site region 72398	1028 bp upstream
Tssr72399	transcription start site region 72399	13 bp downstream
Tssr72400	transcription start site region 72400	51 bp downstream