rs31896675 SNP Detail

Summary

• ID
  rs31896675
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:66965550 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGTCCAATA CAAAAATGAC
  CTCTCTGCCT GTCTACAAAC TGGGAGACAT GATAGCTACT CGTGAAGCAT ACGGCTTGGC
  TCTGGCTAAA TTGGGCCAAT CTAACCAAAG AGTTATCGTT CTAGATGGCG ACACAAAAAA
  CTCTACCTTT TCAGAAGTAT TCAAGAAAGA GCACCCTGAG CGTTTCATAG AGTGCTTTAT
  Y
  GCTGAGCAAA ACATGGTAAG TGTGGCCCTG GGGTGTGCCA CACGAGGACG AACTATTGCT
  TTCGTTAGTA CCTTTGCTGC CTTCCTGACC CGAGCCTTTG ATCAGATCCG AATGGGAGCC
  ATCTCTCAAA CCAACATCAA CTTCGTTGGT TCCCACTGCG GGGTGTCTGT TGGAGAAGAC
  GGACCTTCCC AGATGGCCCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46167508	mCV22601577	ABI	CRAMUS_MOUSE	f	SNP		C	T					C
ss47601635	NES11425490	PERLEGEN	MM_PANEL2	f	SNP	C		T	C	C	C	C		C	C	C	C	C	T	C	C	C
ss145053587	ENSMUSSNP528960	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31896675					SNP	C	C	T	C	C	C	C	C	C	C	C	C	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47601635	NES11425490	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:66965550 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20395	CpG island 20395	515 bp distal
Gm63911	predicted gene, 63911	1876 bp upstream
Tktl2	transketolase-like 2	within coordinates
Tssr77575	transcription start site region 77575	1155 bp downstream
Tssr77576	transcription start site region 77576	1134 bp downstream