rs31896678 SNP Detail

Summary

• ID
  rs31896678
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:66965587 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACTGGGAGA CATGATAGCT
  ACTCGTGAAG CATACGGCTT GGCTCTGGCT AAATTGGGCC AATCTAACCA AAGAGTTATC
  GTTCTAGATG GCGACACAAA AAACTCTACC TTTTCAGAAG TATTCAAGAA AGAGCACCCT
  GAGCGTTTCA TAGAGTGCTT TATCGCTGAG CAAAACATGG TAAGTGTGGC CCTGGGGTGT
  R
  CCACACGAGG ACGAACTATT GCTTTCGTTA GTACCTTTGC TGCCTTCCTG ACCCGAGCCT
  TTGATCAGAT CCGAATGGGA GCCATCTCTC AAACCAACAT CAACTTCGTT GGTTCCCACT
  GCGGGGTGTC TGTTGGAGAA GACGGACCTT CCCAGATGGC CCTGGAGGAC CTAGCCATGT
  TCAGAAGCAT CCCCAACTGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss47601638	NES11425491	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs31896678					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47601638	NES11425491	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:66965587 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20395	CpG island 20395	552 bp distal
Gm63911	predicted gene, 63911	1913 bp upstream
Tktl2	transketolase-like 2	within coordinates
Tssr77575	transcription start site region 77575	1192 bp downstream
Tssr77576	transcription start site region 77576	1171 bp downstream