rs31896681 SNP Detail

Summary

• ID
  rs31896681
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:66965625 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGGCTCTGG CTAAATTGGG
  CCAATCTAAC CAAAGAGTTA TCGTTCTAGA TGGCGACACA AAAAACTCTA CCTTTTCAGA
  AGTATTCAAG AAAGAGCACC CTGAGCGTTT CATAGAGTGC TTTATCGCTG AGCAAAACAT
  GGTAAGTGTG GCCCTGGGGT GTGCCACACG AGGACGAACT ATTGCTTTCG TTAGTACCTT
  Y
  GCTGCCTTCC TGACCCGAGC CTTTGATCAG ATCCGAATGG GAGCCATCTC TCAAACCAAC
  ATCAACTTCG TTGGTTCCCA CTGCGGGGTG TCTGTTGGAG AAGACGGACC TTCCCAGATG
  GCCCTGGAGG ACCTAGCCAT GTTCAGAAGC ATCCCCAACT GCACTGTTTT CTATCCAAGT
  GATGCTGTCT CGACAGAACA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46205206	mCV22601578	ABI	CRAMUS_MOUSE	f	SNP		T	C					T		T
ss47601641	NES11425492	PERLEGEN	MM_PANEL2	f	SNP	T		C	T	T	T	T		C	T	T	T	C	C	T	C	T
ss145053593	ENSMUSSNP4055712	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31896681					SNP	T	T	C	T	T	T	T	T	C	T	T	T	C	C	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47601641	NES11425492	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:66965625 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20395	CpG island 20395	590 bp distal
Gm63911	predicted gene, 63911	1951 bp upstream
Tktl2	transketolase-like 2	within coordinates
Tssr77575	transcription start site region 77575	1230 bp downstream
Tssr77576	transcription start site region 77576	1209 bp downstream