rs31897316 SNP Detail

Summary

• ID
  rs31897316
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:66963333 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TACAA ATAATGTAGG AAGTGTTATT
  Y
  TCTATGTACT ACTAAAAAAC CCATA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J
ss47601557	NES11425682	PERLEGEN	MM_PANEL2	f	SNP	C	T	C	T		T	C		T	C
ss145053525	ENSMUSSNP1429505	ENSEMBL	ENSEMBL_Sanger	f	SNP		T			T
ss322686816	CHEV_8_69034580	CHEVERUD	SCREENING_POP	f	SNP								C			T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J
rs31897316					SNP	C	T	C	T	T	T	C	C	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47601557	NES11425682	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:66963333 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20395	CpG island 20395	930 bp proximal
Gm63911	predicted gene, 63911	within coordinates
Tktl2	transketolase-like 2	1075 bp upstream
Tssr77575	transcription start site region 77575	1051 bp upstream
Tssr77576	transcription start site region 77576	1070 bp upstream