rs31897503 SNP Detail

Summary

• ID
  rs31897503
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:66965877 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAAACCAACA TCAACTTCGT
  TGGTTCCCAC TGCGGGGTGT CTGTTGGAGA AGACGGACCT TCCCAGATGG CCCTGGAGGA
  CCTAGCCATG TTCAGAAGCA TCCCCAACTG CACTGTTTTC TATCCAAGTG ATGCTGTCTC
  GACAGAACAC GCTGTTTATC TGGCAGCCAA CACGAAGGGA ATGTGCTTCA TTCGTACCAC
  Y
  CGGCCAAAAA CAGCAGTTAT TTATACAGCT GAAGAAAACT TTGTGATTGG ACAGGCCAAG
  GTGATCCGCC AGAGTGCAGT CGACAAGGTG ACAGTTATTG GAGCAGGGGT TACTCTGCAT
  GAAGCCTTAG TAGCTGCTGA GGAGCTTTCT CAACAAGGGA TTTTTATTCG TGTCATTGAC
  CTGTTCACTA TCAAACCTCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46292613	mCV22601590	ABI	CRAMUS_MOUSE	f	SNP		T	C					T		T
ss47601653	NES11425499	PERLEGEN	MM_PANEL2	f	SNP	T		C	T	T	T	T		T	T	T	T	C	C	T	C	T
ss145053607	ENSMUSSNP4918604	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C							T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31897503					SNP	T	T	C	T	T	T	T	T	T	T	T	T	C	C	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47601653	NES11425499	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:66965877 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20395	CpG island 20395	842 bp distal
Tktl2	transketolase-like 2	within coordinates
Tssr77575	transcription start site region 77575	1482 bp downstream
Tssr77576	transcription start site region 77576	1461 bp downstream