rs31897522 SNP Detail

Summary

• ID
  rs31897522
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:44398717 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGGGTGCAT AATAAAAGCC
  GACTTGAGTA TCAGTAGTCG GAACTGAATG TGCAGCCTTA GACAGGAGAC CTCAACACTC
  AAGATCCGAG CACTTACTGT ATGCAAGGAT CTGTGCAACA GACACTTATT GTATTATATA
  CCCGAACTGC CACCTCCCCT AGGAGTAGCT CTAAACTCAG CAATGTTCTA GCACTTGGGA
  R
  GCTGAGTCAG GAGGATTTTT GAGAATAGTG AATTCCAGGA CAGCCCAGGA TGGACTACAT
  AGTAATGGGC ACCTCAGTTT AATTAAAGCT GGATGTACGC TTGGGTAAGT TTCAAATGCT
  GGGGGATCAA AAGTTCAAGG TCGGCCTAAG CTACATGAAA CACTGTCTTT AAAAAAAGAA
  TCCAGCCCTG CCTAAGGACT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	MSM/Ms
ss46080272	mCV27580305	ABI	CRAMUS_MOUSE	f	SNP	G	A	G	G	G
ss149120992	ENSMUSSNP3644384	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G		G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	MSM/Ms
rs31897522					SNP	G	A	G	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:44398717 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18993	CpG island 18993	247 bp distal
Rr400296	regulatory region 400296	697 bp downstream
Tssr66420	transcription start site region 66420	733 bp downstream
Tssr66421	transcription start site region 66421	659 bp downstream
Tssr66422	transcription start site region 66422	642 bp downstream
Tssr66423	transcription start site region 66423	365 bp downstream
Tssr66424	transcription start site region 66424	296 bp downstream
Vrk3	vaccinia related kinase 3	within coordinates
Zfp473	zinc finger protein 473	676 bp upstream