rs31898257 SNP Detail

Summary

• ID
  rs31898257
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:66963649 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAATGTCAAA AACTTAATAC
  CTTAGAAAAT GTTGTGCCAC AATTTAAATG AGTGAAAGAG TTTGGGAATT TGAAAGACAT
  GCTAAGTAGT TCTTATTTCT CTCATTTCCT CCCCGTGGGA GCTCTGCCTC ACAGTTCAGT
  TTTATGCTAA TGTGCTTTTA CCAGGTATGT GAATTGGATT TCTTCAGCCA AAATAAGGGG
  Y
  GAGCTTCCAG GAGCGTTCCT TAACTGCTGT CTTGACAGCT CCCCGCGGAT TGTTACTAGA
  AGCTGAGATT ATTCCCCCCC TAGTGTTTAT ATTCTTTAAG TCCTGAGGTC TTTTAATTTT
  TCTACTTTCA TTTACGTAAA GAACTTGTCC AACTTCAACA GTCCTTCATC AAATCTTAGA
  ATCTTTTCTG TCATACTCAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47601569	NES11425686	PERLEGEN	MM_PANEL2	f	SNP	C		T	C	C	C	C	C	C	T	C	C	C
ss145053544	ENSMUSSNP2393339	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31898257					SNP	C	C	T	C	C	C	C	C	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47601569	NES11425686	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:66963649 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20395	CpG island 20395	614 bp proximal
Gm63911	predicted gene, 63911	within coordinates
Tktl2	transketolase-like 2	759 bp upstream
Tssr77575	transcription start site region 77575	735 bp upstream
Tssr77576	transcription start site region 77576	754 bp upstream